Publications
Journal
Inferring monosynaptic connections from paired dendritic spine Ca2+ imaging and large-scale recording of extracellular spiking
Journal of Neural Engineering (2022)
Xiaohan Xue*, Alessio P. Buccino*, Sreedhar Kumar, Andreas Hierlemann, and Julian Bartram
How do spike collisions affect spike sorting performance?
eNeuro (2022)
Samuel Garcia, Alessio P. Buccino*, Pierre Yger
Functional neuronal circuitry and oscillatory dynamics in human brain organoids
Nature Communications (2022)
Tal Sharf, Tjitse van der Molen, Stella M. K. Glasauer, Elmer Guzman, Alessio P. Buccino, Gabriel Luna, Zhouwei Cheng, Morgane Audouard, Kamalini G. Ranasinghe, Kiwamu Kudo, Srikantan S. Nagarajan, Kenneth R Tovar, Linda R Petzold, Andreas Hierlemann, Paul K. Hansma, and Kenneth S. Kosik
Spike sorting: new trends and challenges of the era of high-density probes
Progress in Biomedical Engineering (2022)
Alessio P. Buccino, Samuel Garcia, and Pierre Yger
An automated method for precise axon reconstruction from recordings of high-density micro-electrode arrays
Journal of Neural Engineering (2022)
Alessio P. Buccino, Xinyue Yuan, Vishalini Emmenegger, Xiaohan Xue, Tobias Gänswein, and Andreas Hierlemann
ProbeInterface: a unified framework for probe handling in extracellular electrophysiology
Frontiers in Neuroinformatics (2022)
Samuel Garcia, Julia Sprenger, Tahl Holtzman, and Alessio P. Buccino
Optogenetic pacing of medial septum parvalbumin-positive cells disrupts temporal but not spatial firing in grid cells
Advanced Sciences (2021)
Mikkel Lepperød, Ane Charlotte Christiansen, Kristian Lensø, Alessio P. Buccino, Jai Yu, Marianne Fyhn, and Torkel Hafting.
Electrophysiological Phenotype Characterization of Human iPSC-Derived Neuronal Cell Lines by Means of High-Density Microelectrode Arrays
Advanced Biology (2021)
Silvia Ronchi, Alessio P. Buccino, Gustavo Prack, Sreedhar S. Kumar, Manuel Schröter, Michele Fiscella, and Andreas Hierlemann.
SpikeInterface, a unified framework for spike sorting
eLife (2020)
Alessio P. Buccino1, Cole L. Hurwitz1, Jeremy Magland, Samuel Garcia, Joshua H. Siegle, Roger Hurwitz, Matthias H. Hennig.
SpikeForest: reproducible web-facing ground-truth validation of automated neural spike sorters
eLife (2020)
Jeremy F. Magland, James J. Jun, Elizabeth Lovero, Cole L. Hurwitz, Alessio P. Buccino, Samuel Garcia, and Alex H. Barnett.
MEArec: a fast and customizable testbench simulator for ground-truth extracellular spiking activity
Neuroinformatics (2020)
Alessio P. Buccino and Gaute T. Einevoll
Experimental Pipeline (Expipe): A Lightweight Data Management Platform to Simplify the Steps From Experiment to Data Analysis
Neuroinformatics (2020)
Mikkel E. Lepperød, Svenn-Arne Dragly, Alessio P. Buccino, Milad H. Mobarhan, Anders Malthe-Sørenssen, Torkel Hafting, and Marianne Fyhn
How does the presence of neural probes affect extracellular recordings?
Journal of Neural Engineering (2019)
Alessio P. Buccino, Miroslav Kuchta, Karoline H. Jæger, Torbjørn V. Ness, Pierre Berthet, Kent-Andre Mardal, Gert Cauwenberghs, and Aslak Tveito
Combining biophysical modeling and deep learning for multielectrode array neuron localization and classification
Journal of Neurophysiology (2018)
Alessio P. Buccino1, Michael Kordovan1, Torbjørn V. Ness, Benjamin Merkt, Philipp D. Häfliger, Marianne Fyhn, Gert Cauwenberghs, Stefan Rotter, and Gaute T. Einevoll. (1. equal contribution).
Open source modules for tracking animal behavior and closed-loop stimulation based on Open Ephys and Bonsai
Journal of Neural Engineering (2018)
Alessio P. Buccino, Mikkel E. Lepperød, Svenn-Arne Dragly, Philipp D. Häfliger, Marianne Fyhn, and Torkel Hafting
Hybrid EEG-fNIRS Asynchronous Brain-Computer Interface for Multiple Motor Tasks
Plos One (2016)
Alessio P. Buccino, Hasan O. Keles, and Ahmet Omurtag
Preprints
A multi-modal fitting approach to construct single-neuron models with patch clamp and high-density microelectrode arrays
biorXiv (2022)
Alessio P. Buccino, Tanguy Damart, Julian Bartram, Darshan Mandge, Xiaohan Xue, Mickael Zbili, Tobias Gänswein, Aurelién Jaquier, Vishalini Emmenegger, Henry Markram, Andreas Hierlemann, and Werner Van Geit
Conference
Scalable Spike Source Localization in Extracellular Recordings using Amortized Variational Inference
Advances in Neural Information Processing Systems 2019 (NeurIPS 2019)
Cole L. Hurwitz, Kai Xu, Akash Srivastava, Alessio P. Buccino, Matthias H. Hennig.
Real-time spike sorting for multi-electrode arrays with online independent component analysis
IEEE Biomedical Circuits and Systems Conference (BioCAS 2018)
Alessio P. Buccino, Sheng-Hsiou Hsu, and Gert Cauwenberghs
Independent component analysis for fully automated multi-electrode array spike sorting
IEEE Engineering in Medicine and Biology Society (EMBC 2018)
Alessio P. Buccino, Espen Hagen, Gaute T. Einevoll, Philipp D. Häfliger, and Gert Cauwenberghs
A deep learning approach for the classification of neuronal cell types
IEEE Engineering in Medicine and Biology Society (EMBC 2018)
Alessio P. Buccino, Torbjørn V. Ness, Gaute T. Einevoll, Gert Cauwenberghs, and Philipp D. Häfliger
Localizing neuronal somata from multi-electrode array in-vivo recordings using deep learning
IEEE Engineering in Medicine and Biology Society (EMBC 2017)
Alessio P. Buccino, Torbjørn V. Ness, Gaute T. Einevoll, Gert Cauwenberghs, and Philipp D. Häfliger
Extracellular single neuron stimulation with high-density multi-electrode array
IEEE Biomedical Circuits and Systems Conference (BioCAS 2016)
Alessio P. Buccino, Tristan Stöber, Solveig Næss, Gert Cauwenberghs, and Philipp D. Häfliger
Book Chapters
Improving Neural Simulations with the EMI Model
Modeling Excitable Tissue. Simula SpringerBriefs on Computing (2020)
Alessio P. Buccino, Miroslav Kuchta, Jakob Schreiner, and Kent-André Mardal
Biopotential Measurements and Electrodes
Neural Engineering. Springer (2020)
Abraham Akinin, Akshay Paul, Jun Wang, Alessio P. Buccino, and Gert Cauwenberghs
PhD Thesis
A computationally-assisted approach to extracellular neural electrophysiology with multi-electrode arrays
PhD thesis, University of Oslo (2020)
Alessio P. Buccino
Master Thesis
Development of a hybrid EEG-NIRS brain computer interface for multiple motor tasks
Master thesis, Polytechnic University of Milan (2015)
Alessio P. Buccino